python main.py Fig.1H_HD9197_CBE-d13_S198_L001_R1_001.fastq.gz out/Fig.1H_HD9197_CBE-d13_S198_L001_R1_001 -a GGGACTGCCGTGCCGGGCGGGAGACCGCCATGGCGACCCTGGAAAAGCTGATGAAGGCCTTCGAGTCCCTCAAGTCCTTC(YAR)CAACAG(CCG)CCACCGCCGCCGCCGCCGCCGCCGCCTCCTCAGCTTCCTCAGCCAAAG -rc --no_trim -amas 80
python main.py Fig.1H_HD9197_UT-d7_S196_L001_R1_001.fastq.gz out/Fig.1H_HD9197_UT-d7_S196_L001_R1_001 -a GGGACTGCCGTGCCGGGCGGGAGACCGCCATGGCGACCCTGGAAAAGCTGATGAAGGCCTTCGAGTCCCTCAAGTCCTTC(YAR)CAACAG(CCG)CCACCGCCGCCGCCGCCGCCGCCGCCTCCTCAGCTTCCTCAGCCAAAG -rc --no_trim -amas 80
python main.py Fig.1H_HD9197_UT-d13_S199_L001_R1_001.fastq.gz out/Fig.1H_HD9197_UT-d13_S199_L001_R1_001 -a GGGACTGCCGTGCCGGGCGGGAGACCGCCATGGCGACCCTGGAAAAGCTGATGAAGGCCTTCGAGTCCCTCAAGTCCTTC(YAR)CAACAG(CCG)CCACCGCCGCCGCCGCCGCCGCCGCCTCCTCAGCTTCCTCAGCCAAAG -rc --no_trim -amas 80
python main.py Fig.S1E_HD9197_CBE-d7_PE1forw_S167_L001_R1_001.fastq.gz out/Fig.S1E_HD9197_CBE-d7_PE1forw_S167_L001_R1_001 -a GGGACTGCCGTGCCGGGCGGGAGACCGCCATGGCGACCCTGGAAAAGCTGATGAAGGCCTTCGAGTCCCTCAAGTCCTTC(YAR)CAACAG(CCG)CCACCGCCGCCGCCGCCGCCGCCGCCTCCTCAGCTTCCTCAGCCAAAG -rc --no_trim -amas 80
python main.py Fig.S1E_HD9197_CBE-d13-PE1forw_S170_L001_R1_001.fastq.gz out/Fig.S1E_HD9197_CBE-d13-PE1forw_S170_L001_R1_001 -a GGGACTGCCGTGCCGGGCGGGAGACCGCCATGGCGACCCTGGAAAAGCTGATGAAGGCCTTCGAGTCCCTCAAGTCCTTC(YAR)CAACAG(CCG)CCACCGCCGCCGCCGCCGCCGCCGCCTCCTCAGCTTCCTCAGCCAAAG -rc --no_trim -amas 80
python main.py Fig.S1E_HD9197_UT-d7-PE1forw_S168_L001_R1_001.fastq.gz out/Fig.S1E_HD9197_UT-d7-PE1forw_S168_L001_R1_001 -a GGGACTGCCGTGCCGGGCGGGAGACCGCCATGGCGACCCTGGAAAAGCTGATGAAGGCCTTCGAGTCCCTCAAGTCCTTC(YAR)CAACAG(CCG)CCACCGCCGCCGCCGCCGCCGCCGCCTCCTCAGCTTCCTCAGCCAAAG -rc --no_trim -amas 80
python main.py Fig.S1E_HD9197_UT-d13-PE1forw_S171_L001_R1_001.fastq.gz out/Fig.S1E_HD9197_UT-d13-PE1forw_S171_L001_R1_001 -a GGGACTGCCGTGCCGGGCGGGAGACCGCCATGGCGACCCTGGAAAAGCTGATGAAGGCCTTCGAGTCCCTCAAGTCCTTC(YAR)CAACAG(CCG)CCACCGCCGCCGCCGCCGCCGCCGCCTCCTCAGCTTCCTCAGCCAAAG -rc --no_trim -amas 80
